Design of species- or isozyme-specific enzyme inhibitors. 1. Effect of thymidine substituents on affinity for the thymidine site of hamster cytoplasmic thymidine kinase

J Med Chem. 1979 Jun;22(6):621-31. doi: 10.1021/jm00192a005.

Abstract

5-(Ethylamino)- and 5-acetamido-2'-deoxyuridine 5'-triphosphates were synthesized; the extent and concentration dependence of their inhibitory action on the title enzyme resembled that of the feedback inhibitor TTP. This and other findings provide a tentative indication that bulk tolerance near C-5 of the thymine ring may be more extensive at the TTP site than at the thymidine site. Enzyme-inhibitor dissociation constants (Ki values) were determined for thymidine derivatives monosubstituted at various positions. Competitive inhibition with respect to thymidine (indicative of substituent tolerance in the enzyme-thymidine complex) was produced by 3-amylthymidine (Ki = 65 muM), trans-5-bromo-6-ethoxy-5,6-dihydrothymidine diastereoisomers (Ki = 180 and 310 muM), 5'-C-(acetamidomethyl)- and 5-C-(propionamidomethyl)thymidine epimers (Ki range 65--1100 muM), 3'-acetamido- and 3'-(ethylthio)-3'-deoxythymidines (Ki = 2.5 mM and 12 muM, respectively), and certain 5'-(alkylamino)- and 5'-(alkylthio)-5'-deoxythymidines (Ki range 180--1200 muM). Evidence indicates that bulk tolerance at some, if not most, of the above atoms of thymidine is found in the enzyme-thymidine complexes of human and other mammalian thymidine kinases; attachment of suitable substituents to such atoms could, in principle, lead to thymidine site directed isozyme-specific inhibitors of human cytoplasmic thymidine kinase, which is a candidate target in the design of antineoplastic drugs.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Cricetinae
  • Cytoplasm / enzymology
  • Deoxycytidine / analogs & derivatives
  • Deoxycytidine / chemical synthesis
  • Deoxycytidine / pharmacology
  • Deoxyuridine / analogs & derivatives
  • Deoxyuridine / chemical synthesis
  • Deoxyuridine / pharmacology
  • Humans
  • In Vitro Techniques
  • Isoenzymes / antagonists & inhibitors*
  • Kidney / enzymology
  • Kinetics
  • Methods
  • Mitochondria / enzymology
  • Structure-Activity Relationship
  • Substrate Specificity
  • Thymidine / analogs & derivatives*
  • Thymidine / chemical synthesis
  • Thymidine / pharmacology
  • Thymidine Kinase / antagonists & inhibitors*
  • Thymine Nucleotides / chemical synthesis
  • Thymine Nucleotides / pharmacology

Substances

  • Isoenzymes
  • Thymine Nucleotides
  • Deoxycytidine
  • Thymidine Kinase
  • Thymidine
  • Deoxyuridine